miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158357198|gb|EX665587.1|EX665587 CTTCATCTTCATCTTCTTCAACTCCTTAAATCCCCAAAACCCAATACTCAGAAACCCTCAAACATCACAAAGACTCAGTC
TTTTGATTCAAAAATTTGGAGAGAGATGTCAATAAGAAGCTTAATCCAGGACATGAGGTTTTCCCGGTCGCAGCGGGTGG
TTCAGGACCGGTCGGCGGCGGCGGCGCCGGAGTTGGGCGACTCGTTGAAGCAGAGCTGCTGGGCCCACATGCCTCAGGAG
CTGCTTAGAGAGGTTCTGATGAGAATTGAGGCTTCTGAGGCCGCCTGGCCGCCGCGGAAGAGCGTCGTCGCCTGCGCCGG
AGTTTGCCGGAGCTGGAGGATTTTGACCAAGGAGATCGTTAAGTCTCCTGAGCTCTCCGGGAAGCTCACCTTCCCCATCT
CCGTCAAGCAGCCTGGTCCAAGGGAGGAACTCCTACGGTGCTTTATAAAGCGGAACCGATCCACCCAGACATATTATCTT
TACCTCGGTTCGACCCATGCATTAACTGATGAGGGAAAGTTCCTACTTGCTGCTCGCAAGTATAAACGCCCAACCTGCAC
CGATTATATTATCTCACTAAATGGTGATGATATGTCAAAGGGCAGCAGCAACTATATTGGAAAACTGAGATCAAACTTTT
TGGGAACAAAGTTCACCATCTTTGATGGGCAGCCAACTGATGTGGGAGCCAAGTTTACAAAAAGTCGATCCACTAGGCTA
GTGAATTTGAAACAAGTTTCGCCTAGGGTCCCTGCTGGCAACTATCCTGTGGCTCACATTTCCTACGAACTAAATATGTT
GGGTTCCAGAGTTCGTGCAAGCAGGGGTC




Most similar to sp|Q8VY21|TLP3_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis
           thaliana GN=TULP3 PE=2 SV=1
          Length = 406

 Score =  328 bits (842), Expect = 2e-89
 Identities = 166/254 (65%), Positives = 199/254 (78%), Gaps = 19/254 (7%)
 Frame = +1

Query: 106 MSIRSLIQDMRF------------------SRSQRVVQDRSAAAAPELGDSLKQSCWAHM 231
           MS +SLIQDMR                   SRSQRVVQD S        D+ KQSCWA M
Sbjct: 1   MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRVVQDTSVPV-----DAFKQSCWASM 55

Query: 232 PQELLREVLMRIEASEAAWPPRKSVVACAGVCRSWRILTKEIVKSPELSGKLTFPISVKQ 411
           P ELLR+VLMRIE SE  WP RK+VV+CAGVCR+WR + KEIV+ PELS KLTFPIS+KQ
Sbjct: 56  PPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQ 115

Query: 412 PGPREELLRCFIKRNRSTQTYYLYLGSTHALT-DEGKFLLAARKYKRPTCTDYIISLNGD 588
           PGPR  L++C+I RNRS QTYYLYLG   A + D+GKFLLAA++++RPTCTDYIISLN D
Sbjct: 116 PGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCD 175

Query: 589 DMSKGSSNYIGKLRSNFLGTKFTIFDGQPTDVGAKFTKSRSTRLVNLKQVSPRVPAGNYP 768
           D+S+GS+ YIGKLRSNFLGTKFT++D QPT+ G + T++RS+RL++LKQVSPR+P+GNYP
Sbjct: 176 DVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYP 235

Query: 769 VAHISYELNMLGSR 810
           VAHISYELN+LGSR
Sbjct: 236 VAHISYELNVLGSR 249